| --- |
| jupytext: |
| text_representation: |
| extension: .md |
| format_name: myst |
| kernelspec: |
| name: python3 |
| display_name: Python 3 |
| --- |
| <!--- |
| Licensed to the Apache Software Foundation (ASF) under one |
| or more contributor license agreements. See the NOTICE file |
| distributed with this work for additional information |
| regarding copyright ownership. The ASF licenses this file |
| to you under the Apache License, Version 2.0 (the |
| "License"); you may not use this file except in compliance |
| with the License. You may obtain a copy of the License at |
| |
| http://www.apache.org/licenses/LICENSE-2.0 |
| |
| Unless required by applicable law or agreed to in writing, |
| software distributed under the License is distributed on an |
| "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY |
| KIND, either express or implied. See the License for the |
| specific language governing permissions and limitations |
| under the License. |
| --> |
| |
| (user_guide_data_sources)= |
| |
| # Data Sources |
| |
| DataFusion provides a wide variety of ways to get data into a DataFrame to perform operations. |
| |
| ## Local file |
| |
| DataFusion has the ability to read from a variety of popular file formats, such as {ref}`Parquet <io_parquet>`, |
| {ref}`CSV <io_csv>`, {ref}`JSON <io_json>`, and {ref}`AVRO <io_avro>`. |
| |
| ```{code-cell} ipython3 |
| from datafusion import SessionContext |
| ctx = SessionContext() |
| df = ctx.read_csv("pokemon.csv") |
| df.show() |
| ``` |
| |
| ## Create in-memory |
| |
| Sometimes it can be convenient to create a small DataFrame from a Python list or dictionary object. |
| To do this in DataFusion, you can use one of the three functions |
| {py:func}`~datafusion.context.SessionContext.from_pydict`, |
| {py:func}`~datafusion.context.SessionContext.from_pylist`, or |
| {py:func}`~datafusion.context.SessionContext.create_dataframe`. |
| |
| As their names suggest, `from_pydict` and `from_pylist` will create DataFrames from Python |
| dictionary and list objects, respectively. `create_dataframe` assumes you will pass in a list |
| of list of [PyArrow Record Batches](https://arrow.apache.org/docs/python/generated/pyarrow.RecordBatch.html). |
| |
| The following three examples all will create identical DataFrames: |
| |
| ```{code-cell} ipython3 |
| import pyarrow as pa |
| |
| ctx.from_pylist([ |
| { "a": 1, "b": 10.0, "c": "alpha" }, |
| { "a": 2, "b": 20.0, "c": "beta" }, |
| { "a": 3, "b": 30.0, "c": "gamma" }, |
| ]).show() |
| |
| ctx.from_pydict({ |
| "a": [1, 2, 3], |
| "b": [10.0, 20.0, 30.0], |
| "c": ["alpha", "beta", "gamma"], |
| }).show() |
| |
| batch = pa.RecordBatch.from_arrays( |
| [ |
| pa.array([1, 2, 3]), |
| pa.array([10.0, 20.0, 30.0]), |
| pa.array(["alpha", "beta", "gamma"]), |
| ], |
| names=["a", "b", "c"], |
| ) |
| |
| ctx.create_dataframe([[batch]]).show() |
| |
| ``` |
| |
| ## Object Store |
| |
| DataFusion has support for multiple storage options in addition to local files. |
| The example below requires an appropriate S3 account with access credentials. |
| |
| Supported Object Stores are |
| |
| - {py:class}`~datafusion.object_store.AmazonS3` |
| - {py:class}`~datafusion.object_store.GoogleCloud` |
| - {py:class}`~datafusion.object_store.Http` |
| - {py:class}`~datafusion.object_store.LocalFileSystem` |
| - {py:class}`~datafusion.object_store.MicrosoftAzure` |
| |
| ```python |
| from datafusion.object_store import AmazonS3 |
| |
| region = "us-east-1" |
| bucket_name = "yellow-trips" |
| |
| s3 = AmazonS3( |
| bucket_name=bucket_name, |
| region=region, |
| access_key_id=os.getenv("AWS_ACCESS_KEY_ID"), |
| secret_access_key=os.getenv("AWS_SECRET_ACCESS_KEY"), |
| ) |
| |
| path = f"s3://{bucket_name}/" |
| ctx.register_object_store("s3://", s3, None) |
| |
| ctx.register_parquet("trips", path) |
| |
| ctx.table("trips").show() |
| ``` |
| |
| ## Other DataFrame Libraries |
| |
| DataFusion can import DataFrames directly from other libraries, such as |
| [Polars](https://pola.rs/) and [Pandas](https://pandas.pydata.org/). |
| Since DataFusion version 42.0.0, any DataFrame library that supports the Arrow FFI PyCapsule |
| interface can be imported to DataFusion using the |
| {py:func}`~datafusion.context.SessionContext.from_arrow` function. Older versions of Polars may |
| not support the arrow interface. In those cases, you can still import via the |
| {py:func}`~datafusion.context.SessionContext.from_polars` function. |
| |
| ```python |
| import pandas as pd |
| |
| data = { "a": [1, 2, 3], "b": [10.0, 20.0, 30.0], "c": ["alpha", "beta", "gamma"] } |
| pandas_df = pd.DataFrame(data) |
| |
| datafusion_df = ctx.from_arrow(pandas_df) |
| datafusion_df.show() |
| ``` |
| |
| ```python |
| import polars as pl |
| polars_df = pl.DataFrame(data) |
| |
| datafusion_df = ctx.from_arrow(polars_df) |
| datafusion_df.show() |
| ``` |
| |
| ## Delta Lake |
| |
| DataFusion 43.0.0 and later support the ability to register table providers from sources such |
| as Delta Lake. This will require a recent version of |
| [deltalake](https://delta-io.github.io/delta-rs/) to provide the required interfaces. |
| |
| ```python |
| from deltalake import DeltaTable |
| |
| delta_table = DeltaTable("path_to_table") |
| ctx.register_table("my_delta_table", delta_table) |
| df = ctx.table("my_delta_table") |
| df.show() |
| ``` |
| |
| On older versions of `deltalake` (prior to 0.22) you can use the |
| [Arrow DataSet](https://arrow.apache.org/docs/python/generated/pyarrow.dataset.Dataset.html) |
| interface to import to DataFusion, but this does not support features such as filter push down |
| which can lead to a significant performance difference. |
| |
| ```python |
| from deltalake import DeltaTable |
| |
| delta_table = DeltaTable("path_to_table") |
| ctx.register_dataset("my_delta_table", delta_table.to_pyarrow_dataset()) |
| df = ctx.table("my_delta_table") |
| df.show() |
| ``` |
| |
| ## Apache Iceberg |
| |
| DataFusion 45.0.0 and later support the ability to register Apache Iceberg tables as table providers through the Custom Table Provider interface. |
| |
| This requires either the [pyiceberg](https://pypi.org/project/pyiceberg/) library (>=0.10.0) or the [pyiceberg-core](https://pypi.org/project/pyiceberg-core/) library (>=0.5.0). |
| |
| - The `pyiceberg-core` library exposes Iceberg Rust's implementation of the Custom Table Provider interface as python bindings. |
| - The `pyiceberg` library utilizes the `pyiceberg-core` python bindings under the hood and provides a native way for Python users to interact with the DataFusion. |
| |
| ```python |
| from datafusion import SessionContext |
| from pyiceberg.catalog import load_catalog |
| import pyarrow as pa |
| |
| # Load catalog and create/load a table |
| catalog = load_catalog("catalog", type="in-memory") |
| catalog.create_namespace_if_not_exists("default") |
| |
| # Create some sample data |
| data = pa.table({"x": [1, 2, 3], "y": [4, 5, 6]}) |
| iceberg_table = catalog.create_table("default.test", schema=data.schema) |
| iceberg_table.append(data) |
| |
| # Register the table with DataFusion |
| ctx = SessionContext() |
| ctx.register_table_provider("test", iceberg_table) |
| |
| # Query the table using DataFusion |
| ctx.table("test").show() |
| ``` |
| |
| Note that the Datafusion integration rely on features from the [Iceberg Rust](https://github.com/apache/iceberg-rust/) implementation instead of the [PyIceberg](https://github.com/apache/iceberg-python/) implementation. |
| Features that are available in PyIceberg but not yet in Iceberg Rust will not be available when using DataFusion. |
| |
| ## Custom Table Provider |
| |
| You can implement a custom Data Provider in Rust and expose it to DataFusion through the |
| the interface as describe in the {ref}`Custom Table Provider <io_custom_table_provider>` |
| section. This is an advanced topic, but a |
| [user example](https://github.com/apache/datafusion-python/tree/main/examples/datafusion-ffi-example) |
| is provided in the DataFusion repository. |
| |
| # Catalog |
| |
| A common technique for organizing tables is using a three level hierarchical approach. DataFusion |
| supports this form of organizing using the {py:class}`~datafusion.catalog.Catalog`, |
| {py:class}`~datafusion.catalog.Schema`, and {py:class}`~datafusion.catalog.Table`. By default, |
| a {py:class}`~datafusion.context.SessionContext` comes with a single Catalog and a single Schema |
| with the names `datafusion` and `public`, respectively. |
| |
| The default implementation uses an in-memory approach to the catalog and schema. We have support |
| for adding additional in-memory catalogs and schemas. You can access tables registered in a schema |
| either through the Dataframe API or via sql commands. This can be done like in the following |
| example: |
| |
| ```python |
| import pyarrow as pa |
| from datafusion.catalog import Catalog, Schema |
| from datafusion import SessionContext |
| |
| ctx = SessionContext() |
| |
| my_catalog = Catalog.memory_catalog() |
| my_schema = Schema.memory_schema() |
| my_catalog.register_schema('my_schema_name', my_schema) |
| ctx.register_catalog_provider('my_catalog_name', my_catalog) |
| |
| # Create an in-memory table |
| table = pa.table({ |
| 'name': ['Bulbasaur', 'Charmander', 'Squirtle'], |
| 'type': ['Grass', 'Fire', 'Water'], |
| 'hp': [45, 39, 44], |
| }) |
| df = ctx.create_dataframe([table.to_batches()], name='pokemon') |
| |
| my_schema.register_table('pokemon', df) |
| |
| ctx.sql('SELECT * FROM my_catalog_name.my_schema_name.pokemon').show() |
| ``` |
| |
| ## User Defined Catalog and Schema |
| |
| If the in-memory catalogs are insufficient for your uses, there are two approaches you can take |
| to implementing a custom catalog and/or schema. In the below discussion, we describe how to |
| implement these for a Catalog, but the approach to implementing for a Schema is nearly |
| identical. |
| |
| DataFusion supports Catalogs written in either Rust or Python. If you write a Catalog in Rust, |
| you will need to export it as a Python library via PyO3. There is a complete example of a |
| catalog implemented this way in the |
| [examples folder](https://github.com/apache/datafusion-python/tree/main/examples/) |
| of our repository. Writing catalog providers in Rust provides typically can lead to significant |
| performance improvements over the Python based approach. |
| |
| To implement a Catalog in Python, you will need to inherit from the abstract base class |
| {py:class}`~datafusion.catalog.CatalogProvider`. There are examples in the |
| [unit tests](https://github.com/apache/datafusion-python/tree/main/python/tests) of |
| implementing a basic Catalog in Python where we simply keep a dictionary of the |
| registered Schemas. |
| |
| One important note for developers is that when we have a Catalog defined in Python, we have |
| two different ways of accessing this Catalog. First, we register the catalog with a Rust |
| wrapper. This allows for any rust based code to call the Python functions as necessary. |
| Second, if the user access the Catalog via the Python API, we identify this and return back |
| the original Python object that implements the Catalog. This is an important distinction |
| for developers because we do *not* return a Python wrapper around the Rust wrapper of the |
| original Python object. |