Freeze PyO3 wrappers & introduce interior mutability to avoid PyO3 borrow errors (#1253) * Refactor schema, config, dataframe, and expression classes to use RwLock and Mutex for interior mutability * Add error handling to CaseBuilder methods to preserve builder state * Refactor to use parking_lot for interior mutability in schema, config, dataframe, and conditional expression modules * Add concurrency tests for SqlSchema, Config, and DataFrame * Add tests for CaseBuilder to ensure builder state is preserved on success * Add test for independent handles in CaseBuilder to verify behavior * Fix CaseBuilder to preserve state correctly in when() method * Refactor to use named constant for boolean literals in test_expr.py * fix ruff errors * Refactor to introduce type aliases for cached batches in dataframe.rs * Cherry pick from #1252 * Add most expr - cherry pick from #1252 * Add source root - cherry pick #1252 * Fix license comment formatting in config.rs * Refactor caching logic to use a local variable for IPython environment check * Add test for ensuring exposed pyclasses default to frozen * Add PyO3 class mutability guidelines reference to contributor guide * Mark boolean expression classes as frozen for immutability * Refactor PyCaseBuilder methods to eliminate redundant take/store logic * Refactor PyConfig methods to improve readability by encapsulating configuration reads * Resolve patch apply conflicts for CaseBuilder concurrency improvements - Added CaseBuilderHandle guard that keeps the underlying CaseBuilder alive while holding the mutex and restores it on drop - Updated when, otherwise, and end methods to operate through the guard and consume the builder explicitly - This prevents transient None states during concurrent access and improves thread safety * Resolve Config optimization conflicts for improved read/write concurrency - Released Config read guard before converting values to Python objects in get and get_all - Ensures locks are held only while collecting scalar entries, not during expensive Python object conversion - Added regression test that runs Config.get_all and Config.set concurrently to guard against read/write contention regressions - Improves overall performance by reducing lock contention in multi-threaded scenarios * Refactor PyConfig get methods for improved readability and performance * Refactor test_expr.py to replace positional boolean literals with named constants for improved linting compliance * fix ruff errors * Add license header to test_pyclass_frozen.py for compliance * Alternate approach to case expression * Replace case builter with keeping the expressions and then applying as required * Update unit tests * Refactor case and when functions to utilize PyCaseBuilder for improved clarity and functionality * Update src/expr/conditional_expr.rs --------- Co-authored-by: ntjohnson1 <24689722+ntjohnson1@users.noreply.github.com> Co-authored-by: Tim Saucer <timsaucer@gmail.com>
This is a Python library that binds to Apache Arrow in-memory query engine DataFusion.
DataFusion's Python bindings can be used as a foundation for building new data systems in Python. Here are some examples:
For tips on tuning parallelism, see Maximizing CPU Usage in the configuration guide.
The following example demonstrates running a SQL query against a Parquet file using DataFusion, storing the results in a Pandas DataFrame, and then plotting a chart.
The Parquet file used in this example can be downloaded from the following page:
from datafusion import SessionContext # Create a DataFusion context ctx = SessionContext() # Register table with context ctx.register_parquet('taxi', 'yellow_tripdata_2021-01.parquet') # Execute SQL df = ctx.sql("select passenger_count, count(*) " "from taxi " "where passenger_count is not null " "group by passenger_count " "order by passenger_count") # convert to Pandas pandas_df = df.to_pandas() # create a chart fig = pandas_df.plot(kind="bar", title="Trip Count by Number of Passengers").get_figure() fig.savefig('chart.png')
This produces the following chart:
You can use SessionContext's register_view method to convert a DataFrame into a view and register it with the context.
from datafusion import SessionContext, col, literal # Create a DataFusion context ctx = SessionContext() # Create sample data data = {"a": [1, 2, 3, 4, 5], "b": [10, 20, 30, 40, 50]} # Create a DataFrame from the dictionary df = ctx.from_pydict(data, "my_table") # Filter the DataFrame (for example, keep rows where a > 2) df_filtered = df.filter(col("a") > literal(2)) # Register the dataframe as a view with the context ctx.register_view("view1", df_filtered) # Now run a SQL query against the registered view df_view = ctx.sql("SELECT * FROM view1") # Collect the results results = df_view.collect() # Convert results to a list of dictionaries for display result_dicts = [batch.to_pydict() for batch in results] print(result_dicts)
This will output:
[{'a': [3, 4, 5], 'b': [30, 40, 50]}]
It is possible to configure runtime (memory and disk settings) and configuration settings when creating a context.
runtime = ( RuntimeEnvBuilder() .with_disk_manager_os() .with_fair_spill_pool(10000000) ) config = ( SessionConfig() .with_create_default_catalog_and_schema(True) .with_default_catalog_and_schema("foo", "bar") .with_target_partitions(8) .with_information_schema(True) .with_repartition_joins(False) .with_repartition_aggregations(False) .with_repartition_windows(False) .with_parquet_pruning(False) .set("datafusion.execution.parquet.pushdown_filters", "true") ) ctx = SessionContext(config, runtime)
Refer to the API documentation for more information.
Printing the context will show the current configuration settings.
print(ctx)
For information about how to extend DataFusion Python, please see the extensions page of the online documentation.
See examples for more information.
uv add datafusion
pip install datafusion # or python -m pip install datafusion
conda install -c conda-forge datafusion
You can verify the installation by running:
>>> import datafusion >>> datafusion.__version__ '0.6.0'
This assumes that you have rust and cargo installed. We use the workflow recommended by pyo3 and maturin. The Maturin tools used in this workflow can be installed either via uv or pip. Both approaches should offer the same experience. It is recommended to use uv since it has significant performance improvements over pip.
Currently for protobuf support either protobuf or cmake must be installed.
Bootstrap (uv):
By default uv will attempt to build the datafusion python package. For our development we prefer to build manually. This means that when creating your virtual environment using uv sync you need to pass in the additional --no-install-package datafusion and for uv run commands the additional parameter --no-project
# fetch this repo git clone git@github.com:apache/datafusion-python.git # cd to the repo root cd datafusion-python/ # create the virtual environment uv sync --dev --no-install-package datafusion # activate the environment source .venv/bin/activate
Bootstrap (pip):
# fetch this repo git clone git@github.com:apache/datafusion-python.git # cd to the repo root cd datafusion-python/ # prepare development environment (used to build wheel / install in development) python3 -m venv .venv # activate the venv source .venv/bin/activate # update pip itself if necessary python -m pip install -U pip # install dependencies python -m pip install -r pyproject.toml
The tests rely on test data in git submodules.
git submodule update --init
Whenever rust code changes (your changes or via git pull):
# make sure you activate the venv using "source venv/bin/activate" first maturin develop --uv python -m pytest
Alternatively if you are using uv you can do the following without needing to activate the virtual environment:
uv run --no-project maturin develop --uv uv --no-project pytest .
datafusion-python takes advantage of pre-commit to assist developers with code linting to help reduce the number of commits that ultimately fail in CI due to linter errors. Using the pre-commit hooks is optional for the developer but certainly helpful for keeping PRs clean and concise.
Our pre-commit hooks can be installed by running pre-commit install, which will install the configurations in your DATAFUSION_PYTHON_ROOT/.github directory and run each time you perform a commit, failing to complete the commit if an offending lint is found allowing you to make changes locally before pushing.
The pre-commit hooks can also be run adhoc without installing them by simply running pre-commit run --all-files.
NOTE: the current pre-commit hooks require docker, and cmake. See note on protobuf above.
There are scripts in ci/scripts for running Rust and Python linters.
./ci/scripts/python_lint.sh ./ci/scripts/rust_clippy.sh ./ci/scripts/rust_fmt.sh ./ci/scripts/rust_toml_fmt.sh
To change test dependencies, change the pyproject.toml and run
uv sync --dev --no-install-package datafusion