feat: create free-threaded python wheels (#1553)

* Initial commit for free threaded python support

* ci: use uvx to run maturin in native wheel builds

The free-threaded matrix entries skip `uv sync` to avoid resolving
project dependencies against cp313t/cp314t (many dev deps lack
free-threaded wheels), so `uv run --no-project maturin` failed on
macOS/Windows with "Failed to spawn: `maturin`". Switch to
`uvx maturin@1.8.1`, which runs maturin in an isolated tool env
independent of the project venv and matches the pin used by
maturin-action for manylinux builds.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* ci: resolve free-threaded interpreter path explicitly on Windows

maturin's `--interpreter python3.14t` fails on Windows because the
free-threaded build ships as plain `python.exe` (no `tN` suffix). Look
up `sys.executable` of the python on PATH (which actions/setup-python
prepends with the free-threaded install), assert
`Py_GIL_DISABLED == 1` so a misconfigured PATH can't silently build a
GIL wheel, and normalize backslashes to forward slashes so the path
survives re-expansion in the downstream `run:` line.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* build: enable PyO3 generate-import-lib for Windows free-threaded wheels

Windows free-threaded Python does not expose `abiflags` in sysconfig,
so PyO3's default Windows linkage path fails with "A python 3
interpreter on Windows does not define abiflags in its sysconfig ಠ_ಠ"
when building cp31Xt wheels. Enabling the `generate-import-lib` PyO3
feature switches Windows builds to a generated import library
(provided by the `python3-dll-a` crate) that does not depend on a
fully populated sysconfig. It is a no-op on macOS and Linux and is
compatible with the existing `abi3` feature.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* ci: bump maturin to 1.13.3 for Windows free-threaded support

maturin 1.8.1 errors out on Windows free-threaded interpreters with
"A python 3 interpreter on Windows does not define abiflags in its
sysconfig" even when given a valid `python.exe`. Newer maturin
releases handle the missing abiflags gracefully for cp31Xt builds.
Bump both the `uvx maturin@` pin used for native macOS/Windows wheels
and the `maturin-version` passed to PyO3/maturin-action for the
manylinux containers.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* ci: standardize wheel build job names as "<OS> <arch> (<tag>)"

The mac/Windows matrix shared a single name template that prepended
"macOS arm64 & Windows" to every entry, which got truncated in the
GitHub UI sidebar and made it hard to tell macOS and Windows runs
apart. Rename all wheel build jobs to the same pattern so the OS,
architecture, and python tag are visible at a glance:

- Linux x86_64 / arm64
- macOS arm64 / x86_64
- Windows x86_64

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* taplo fmt

* build: move pygithub to release group to fix free-threaded wheel builds

pygithub pulls in cryptography via pyjwt[crypto]. cryptography 44.0.0
ships only abi3 wheels, which free-threaded interpreters cannot use, so
uv builds it from sdist; its bundled PyO3 0.23.2 caps at Python 3.13 and
fails on 3.14t. pygithub is only used by the manual release changelog
script, so move it out of the dev group into a new release group.
'uv sync --dev' (used by CI test jobs) no longer drags in cryptography.

* ci: pin uv venv to setup-python interpreter for free-threaded jobs

Passing a bare version like '3.13t' to 'uv venv --python' let uv fall
back to a different system interpreter (3.12), creating a venv whose ABI
did not match the downloaded cp313t wheel and failing the install. Use
the python-path output from setup-python so the venv uses exactly the
interpreter that was set up.

* taplo fmt

* ci: set UV_PYTHON so uv sync keeps the free-threaded interpreter

Pinning only 'uv venv --python' was not enough: 'uv sync' ignores the
existing .venv, runs its own interpreter discovery, and recreated the
venv with the system 3.12, again mismatching the cp313t wheel. Set
UV_PYTHON to the setup-python interpreter for the install and test
steps so every uv command (venv, sync, pip, run) uses it.

* ci: run tests from the .venv, not the bare setup-python interpreter

Setting UV_PYTHON on the test step pointed 'uv run --no-project pytest'
at the setup-python interpreter, which has no pytest installed, causing
'Failed to spawn: pytest'. UV_PYTHON is only needed in the install step
to build the .venv with the right interpreter; the test step must use
that .venv. Drop UV_PYTHON from the test step.

Co-Authored-By: Claude <noreply@anthropic.com>

* ci: install datafusion wheel into the activated .venv

Setting UV_PYTHON as a step env split the install across two
environments: 'uv sync' populated .venv while 'uv pip install' targeted
the bare setup-python interpreter, so the datafusion wheel never landed
in .venv and 'import datafusion' failed under pytest. Pin the
interpreter at 'uv venv --python', activate the venv, and pass --active
to 'uv sync' so sync and pip install both target the same .venv.

Co-Authored-By: Claude <noreply@anthropic.com>

* ci: point uv at the venv interpreter by path for free-threaded jobs

Activating the venv and passing --active still let 'uv sync' run its own
interpreter discovery, which skips free-threaded builds and re-picked the
system 3.12, recreating .venv and breaking the cp313t/cp314t wheel
install. Pass the venv's own interpreter (.venv/bin/python) explicitly to
'uv sync', 'uv pip install', and 'uv run' so every step stays in the
free-threaded environment created by 'uv venv'.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
8 files changed
tree: 8f2db8f7e47dbb7331eeb46cbb3273b9e5b54f0c
  1. .ai/
  2. .claude/
  3. .github/
  4. benchmarks/
  5. ci/
  6. crates/
  7. dev/
  8. docs/
  9. examples/
  10. python/
  11. skills/
  12. .asf.yaml
  13. .dockerignore
  14. .gitignore
  15. .gitmodules
  16. .pre-commit-config.yaml
  17. AGENTS.md
  18. Cargo.lock
  19. Cargo.toml
  20. CHANGELOG.md
  21. conftest.py
  22. LICENSE.txt
  23. pyproject.toml
  24. README.md
  25. rustfmt.toml
  26. uv.lock
README.md

DataFusion in Python

Python test Python Release Build

This is a Python library that binds to Apache Arrow in-memory query engine DataFusion.

DataFusion's Python bindings can be used as a foundation for building new data systems in Python. Here are some examples:

  • Dask SQL uses DataFusion's Python bindings for SQL parsing, query planning, and logical plan optimizations, and then transpiles the logical plan to Dask operations for execution.
  • DataFusion Ballista is a distributed SQL query engine that extends DataFusion's Python bindings for distributed use cases.
  • DataFusion Ray is another distributed query engine that uses DataFusion's Python bindings.

Features

  • Execute queries using SQL or DataFrames against CSV, Parquet, and JSON data sources.
  • Queries are optimized using DataFusion's query optimizer.
  • Execute user-defined Python code from SQL.
  • Exchange data with Pandas and other DataFrame libraries that support PyArrow.
  • Serialize and deserialize query plans in Substrait format.
  • Experimental support for transpiling SQL queries to DataFrame calls with Polars, Pandas, and cuDF.

For tips on tuning parallelism, see Maximizing CPU Usage in the configuration guide.

Example Usage

The following example demonstrates running a SQL query against a Parquet file using DataFusion, storing the results in a Pandas DataFrame, and then plotting a chart.

The Parquet file used in this example can be downloaded from the following page:

from datafusion import SessionContext

# Create a DataFusion context
ctx = SessionContext()

# Register table with context
ctx.register_parquet('taxi', 'yellow_tripdata_2021-01.parquet')

# Execute SQL
df = ctx.sql("select passenger_count, count(*) "
             "from taxi "
             "where passenger_count is not null "
             "group by passenger_count "
             "order by passenger_count")

# convert to Pandas
pandas_df = df.to_pandas()

# create a chart
fig = pandas_df.plot(kind="bar", title="Trip Count by Number of Passengers").get_figure()
fig.savefig('chart.png')

This produces the following chart:

Chart

Registering a DataFrame as a View

You can use SessionContext's register_view method to convert a DataFrame into a view and register it with the context.

from datafusion import SessionContext, col, literal

# Create a DataFusion context
ctx = SessionContext()

# Create sample data
data = {"a": [1, 2, 3, 4, 5], "b": [10, 20, 30, 40, 50]}

# Create a DataFrame from the dictionary
df = ctx.from_pydict(data, "my_table")

# Filter the DataFrame (for example, keep rows where a > 2)
df_filtered = df.filter(col("a") > literal(2))

# Register the dataframe as a view with the context
ctx.register_view("view1", df_filtered)

# Now run a SQL query against the registered view
df_view = ctx.sql("SELECT * FROM view1")

# Collect the results
results = df_view.collect()

# Convert results to a list of dictionaries for display
result_dicts = [batch.to_pydict() for batch in results]

print(result_dicts)

This will output:

[{'a': [3, 4, 5], 'b': [30, 40, 50]}]

Configuration

It is possible to configure runtime (memory and disk settings) and configuration settings when creating a context.

runtime = (
    RuntimeEnvBuilder()
    .with_disk_manager_os()
    .with_fair_spill_pool(10000000)
)
config = (
    SessionConfig()
    .with_create_default_catalog_and_schema(True)
    .with_default_catalog_and_schema("foo", "bar")
    .with_target_partitions(8)
    .with_information_schema(True)
    .with_repartition_joins(False)
    .with_repartition_aggregations(False)
    .with_repartition_windows(False)
    .with_parquet_pruning(False)
    .set("datafusion.execution.parquet.pushdown_filters", "true")
)
ctx = SessionContext(config, runtime)

Refer to the API documentation for more information.

Printing the context will show the current configuration settings.

print(ctx)

Extensions

For information about how to extend DataFusion Python, please see the extensions page of the online documentation.

More Examples

See examples for more information.

Executing Queries with DataFusion

Running User-Defined Python Code

Substrait Support

How to install

uv

uv add datafusion

Pip

pip install datafusion
# or
python -m pip install datafusion

Conda

conda install -c conda-forge datafusion

You can verify the installation by running:

>>> import datafusion
>>> datafusion.__version__
'0.6.0'

Using DataFusion with AI coding assistants

This project ships a SKILL.md that teaches AI coding assistants how to write idiomatic DataFusion Python. It follows the Agent Skills open standard.

Preferred: npx skills add apache/datafusion-python — installs the skill in Claude Code, Cursor, Windsurf, Cline, Codex, Copilot, Gemini CLI, and other supported agents.

Manual: paste this line into your project's AGENTS.md / CLAUDE.md:

For DataFusion Python code, see https://github.com/apache/datafusion-python/blob/main/skills/datafusion_python/SKILL.md

How to develop

This assumes that you have rust and cargo installed. We use the workflow recommended by pyo3 and maturin. The Maturin tools used in this workflow can be installed either via uv or pip. Both approaches should offer the same experience. It is recommended to use uv since it has significant performance improvements over pip.

Currently for protobuf support either protobuf or cmake must be installed.

Bootstrap (uv):

By default uv will attempt to build the datafusion python package. For our development we prefer to build manually. This means that when creating your virtual environment using uv sync you need to pass in the additional --no-install-package datafusion and for uv run commands the additional parameter --no-project

# fetch this repo
git clone git@github.com:apache/datafusion-python.git
# cd to the repo root
cd datafusion-python/
# create the virtual environment
uv sync --dev --no-install-package datafusion
# activate the environment
source .venv/bin/activate

Bootstrap (pip):

# fetch this repo
git clone git@github.com:apache/datafusion-python.git
# cd to the repo root
cd datafusion-python/
# prepare development environment (used to build wheel / install in development)
python3 -m venv .venv
# activate the venv
source .venv/bin/activate
# update pip itself if necessary
python -m pip install -U pip
# install dependencies
python -m pip install -r pyproject.toml

The tests rely on test data in git submodules.

git submodule update --init

Whenever rust code changes (your changes or via git pull):

# make sure you activate the venv using "source venv/bin/activate" first
maturin develop --uv
python -m pytest

Alternatively if you are using uv you can do the following without needing to activate the virtual environment:

uv run --no-project maturin develop --uv
uv run --no-project pytest

To run the FFI tests within the examples folder, after you have built datafusion-python with the previous commands:

cd examples/datafusion-ffi-example
uv run --no-project maturin develop --uv
uv run --no-project pytest python/tests/_test_*py

Running & Installing pre-commit hooks

datafusion-python takes advantage of pre-commit to assist developers with code linting to help reduce the number of commits that ultimately fail in CI due to linter errors. Using the pre-commit hooks is optional for the developer but certainly helpful for keeping PRs clean and concise.

Our pre-commit hooks can be installed by running pre-commit install, which will install the configurations in your DATAFUSION_PYTHON_ROOT/.github directory and run each time you perform a commit, failing to complete the commit if an offending lint is found allowing you to make changes locally before pushing.

The pre-commit hooks can also be run adhoc without installing them by simply running pre-commit run --all-files.

NOTE: the current pre-commit hooks require docker, and cmake. See note on protobuf above.

Running linters without using pre-commit

There are scripts in ci/scripts for running Rust and Python linters.

./ci/scripts/python_lint.sh
./ci/scripts/rust_clippy.sh
./ci/scripts/rust_fmt.sh
./ci/scripts/rust_toml_fmt.sh

Checking Upstream DataFusion Coverage

This project includes an AI agent skill for auditing which features from the upstream Apache DataFusion Rust library are not yet exposed in these Python bindings. This is useful when adding missing functions, auditing API coverage, or ensuring parity with upstream.

The skill accepts an optional area argument:

scalar functions
aggregate functions
window functions
dataframe
session context
ffi types
all

If no argument is provided, it defaults to checking all areas. The skill will fetch the upstream DataFusion documentation, compare it against the functions and methods exposed in this project, and produce a coverage report listing what is currently exposed and what is missing.

The skill definition lives in .ai/skills/check-upstream/SKILL.md and follows the Agent Skills open standard. It can be used by any AI coding agent that supports skill discovery, or followed manually.

How to update dependencies

To change test dependencies, change the pyproject.toml and run

uv sync --dev --no-install-package datafusion