Builds a binary installation of the cTAKES application. The installation is placed in a zip file in the target/ directory. The scripts in the bin/ directory are meant to be run from within a binary installation. They will not work in the source project.
To use these scripts, build a binary installation by running

mvn package

and then unzip the apache-ctakes-*-bin.zip or apache-ctakes-*.tar.z file in the ctakes-distribution/target/ directory into a new directory that is not within the cTAKES source directories.