| # Powered by Apache Airavata |
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| ## Research Software |
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| * [Cybershuttle](https://cybershuttle.org/) |
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| ## Workshops and Tutorials |
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| * 04/11/2025 [Cyberinfrastructure and Services for Science & Engineering (CISSE25) Workshop](https://cybershuttle.org/events) |
| * 05/07/2025 [Data-Driven and Large-Scale Modeling in Neuroscience (NeuroData25) Workshop](https://cybershuttle.org/events) |
| * 12/16/2024 - 12/20/2024 [62nd Hands-On Workshop on Computational Biophysics](https://www.ks.uiuc.edu/Training/Workshop/Auburn2024B/) |
| |
| ## Projects using Airavata |
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| * [Bio-realistic multiscale simulations of cortical circuits](https://github.com/cyber-shuttle/allenai-v1) |
| * [Constructing computational neuroscience models from large public databases and brain atlases](https://github.com/cyber-shuttle/airavata-cerebrum) |
| * [Running a large-scale brain model during awake and sleep states](https://github.com/cyber-shuttle/whole-brain-public) |
| * [Running a biologically constrained RNN via Dale's backpropagation and topologically-informed pruning](https://github.com/cyber-shuttle/biologicalRNNs) |
| * [One-hot Generalized Linear Model for Switching Brain State Discovery](https://github.com/cyber-shuttle/onehot-hmmglm) |
| * [Scaling up neural data analysis with torch_brain and temporaldata](https://github.com/cyber-shuttle/neurodata25_torchbrain_notebooks) |
| * [Run the NetFormer model for neural connectivity](https://github.com/cyber-shuttle/neuroaihub-netformer) |
| * [Computing with Neural Oscillators](https://github.com/cyber-shuttle/imamlab-neural-oscillators) |
| * [Getting started with Cybershuttle](https://github.com/cyber-shuttle/cybershuttle-reference) |
| * [Malicious URL Detector](https://github.com/airavata-courses/malicious-url-detector) |
| * [FENICS Surfing Test](https://github.com/cyber-shuttle/fenics_surfing_test) |
| * [MFC demo for Cybershuttle CISSE25](https://github.com/cyber-shuttle/mfc-cybershuttle) |
| * [QCArchive+QCMLForge through Cybershuttle](https://github.com/cyber-shuttle/psi4_interaction_energy_cybershuttle) |
| * [Using MatterTune](https://github.com/cyber-shuttle/MatterTune) |
| * [AMBER Demo](https://github.com/cyber-shuttle/Amber_demo) |
| * [OpenFold Attention Visualization](https://github.com/vizfold/attention-viz-demo) |
| * [Evo2 Examples](https://github.com/cyber-shuttle/evo2) |
| * [Simulating plasma physics with Gkeyll](https://github.com/cyber-shuttle/gkeyll) |
| * [FAIR Science in Water Resources using CyberFaCES](https://github.com/cyber-shuttle/cyberfaces) |
| * [NAMD Workshop 2024](https://github.com/cyber-shuttle/namd-workshop-2024) |
| * [MD Examples](https://github.com/cyber-shuttle/md-example) |
